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HAM DNA Group #1
ANCESTRAL Reconstruction Using Y-SEARCH
Output from Dean McGee's Utility



Below is the resulting output of the ANCESTRAL mutations from McGee's Utility that was used for the Y-SEARCH study.

The PHYLIP compatible data (near the bottom) was then run through the PHYLIP "Kitsch" program and graphed.


  - Dave

FTDNA Configuration - DNA Results Comparison
ID D
Y
S
3
9
3
 D
Y
S
3
9
0
 D
Y
S
1
9
/
3
9
4
 D
Y
S
3
9
1
 D
Y
S
3
8
5
a
 D
Y
S
3
8
5
b
 D
Y
S
4
2
6
 D
Y
S
3
8
8
 D
Y
S
4
3
9
 D
Y
S
3
8
9
-
1
 D
Y
S
3
9
2
 D
Y
S
3
8
9
-
2
 D
Y
S
4
5
8
 D
Y
S
4
5
9
a
 D
Y
S
4
5
9
b
 D
Y
S
4
5
5
 D
Y
S
4
5
4
 D
Y
S
4
4
7
 D
Y
S
4
3
7
 D
Y
S
4
4
8
 D
Y
S
4
4
9
 D
Y
S
4
6
4
a
 D
Y
S
4
6
4
b
 D
Y
S
4
6
4
c
 D
Y
S
4
6
4
d
 D
Y
S
4
6
0
 G
A
T
A
H
4
 Y
C
A
I
I
a
 Y
C
A
I
I
b
 D
Y
S
4
5
6
 D
Y
S
6
0
7
 D
Y
S
5
7
6
 D
Y
S
5
7
0
 C
D
Y
a
 C
D
Y
b
 D
Y
S
4
4
2
 D
Y
S
4
3
8
 D
Y
S
5
3
1
 D
Y
S
5
7
8
 D
Y
S
3
9
5
S
1
a
 D
Y
S
3
9
5
S
1
b
 D
Y
S
5
9
0
 D
Y
S
5
3
7
 D
Y
S
6
4
1
 D
Y
S
4
7
2
 D
Y
S
4
0
6
S
1
 D
Y
S
5
1
1
 D
Y
S
4
2
5
 D
Y
S
4
1
3
a
 D
Y
S
4
1
3
b
 D
Y
S
5
5
7
 D
Y
S
5
9
4
 D
Y
S
4
3
6
 D
Y
S
4
9
0
 D
Y
S
5
3
4
 D
Y
S
4
5
0
 D
Y
S
4
4
4
 D
Y
S
4
8
1
 D
Y
S
5
2
0
 D
Y
S
4
4
6
 D
Y
S
6
1
7
 D
Y
S
5
6
8
 D
Y
S
4
8
7
 D
Y
S
5
7
2
 D
Y
S
6
4
0
 D
Y
S
4
9
2
 D
Y
S
5
6
5
ANCESTRAL 132215101314111412141130148911112316202712141416111019211414162036371110                              
40777 WmVA 13221410131411141114113014898112316202712141516111019211414162036361110118151691110899122225141012121481225201313111211111211
68140 WmVA 13221410131411141114113014898112316202712141516111019211414162036361110                              
58559 WmVA 13221410131411141114113014898112316202712141516111019211414162036371110                              
70450 WmVA 13221410131411141214113014898112316202712141516111019211414162036371110                              
21554 Arth 132214101314111411141130                                                       
42370 WmNC 13221510131411141113112914898112316202712141516111019211414162035361110118151691110899122225141012121481225201313111211111211
46246 Geor 132214101314111411131129148911112316202712141416111019211414162035361110                              
55330 WmNC 132215101314111411131129                                                       
27814 Valn 13221410131511141114113015898112316203012141416101017211615172034371210                              
Distance from reference: Zero One Two Three+

Fluxus data - paste into a .ych file

SMGF Database Configuration - DNA Results Comparison
ID D
Y
S
3
8
5
 D
Y
S
3
8
8
 D
Y
S
3
8
9
I
 D
Y
S
3
8
9
I
I
 D
Y
S
3
9
0
 D
Y
S
3
9
1
 D
Y
S
3
9
2
 D
Y
S
3
9
3
 D
Y
S
3
9
4
/
1
9
 D
Y
S
4
2
6
 D
Y
S
4
3
7
 D
Y
S
4
3
8
 D
Y
S
4
3
9
 D
Y
S
4
4
1
 D
Y
S
4
4
2
 D
Y
S
4
4
4
 D
Y
S
4
4
5
 D
Y
S
4
4
6
 D
Y
S
4
4
7
 D
Y
S
4
4
8
 D
Y
S
4
4
9
 D
Y
S
4
5
2
 D
Y
S
4
5
4
 D
Y
S
4
5
5
 D
Y
S
4
5
6
 D
Y
S
4
5
8
 D
Y
S
4
5
9
 D
Y
S
4
6
0
 D
Y
S
4
6
1
 D
Y
S
4
6
2
 D
Y
S
4
6
3
 D
Y
S
4
6
4
 G
G
A
A
T
1
B
0
7
 Y
C
A
I
I
 Y
-
G
A
T
A
-
A
1
0
 Y
-
G
A
T
A
-
C
4
 Y
-
G
A
T
A
-
H
4
ANCESTRAL 13-14141430221011131611161012
11


232327
111114148-911


12-14-14-16
19-21

11
40777 WmVA 13-14141430221011131511161011
1112
13232327
11814148-911


12-14-15-16
19-21

11
68140 WmVA 13-14141430221011131511161011
11


232327
11814148-911


12-14-15-16
19-21

11
58559 WmVA 13-14141430221011131511161011
11


232327
11814148-911


12-14-15-16
19-21

11
70450 WmVA 13-14141430221011131511161012
11


232327
11814148-911


12-14-15-16
19-21

11
21554 Arth 13-14141430221011131511

11























42370 WmNC 13-14141329221011131611161011
1112
13232327
11814148-911


12-14-15-16
19-21

11
46246 Geor 13-14141329221011131511161011
11


232327
111114148-911


12-14-14-16
19-21

11
55330 WmNC 13-14141329221011131611

11























27814 Valn 13-15141430221011131511161011
12


232330
11816158-910


12-14-14-16
17-21

11
Distance from reference: Zero One Two Three+

Ybase Database Configuration - DNA Results Comparison
ID D
Y
S
1
9
/
3
9
4
 D
Y
S
3
8
5
a
 D
Y
S
3
8
5
b
 D
Y
S
3
8
8
 D
Y
S
3
8
9
i
 D
Y
S
3
8
9
i
i
 D
Y
S
3
9
0
 D
Y
S
3
9
1
 D
Y
S
3
9
2
 D
Y
S
3
9
3
 D
Y
S
4
2
5
 D
Y
S
4
2
6
 D
Y
S
4
3
7
 D
Y
S
4
3
8
 D
Y
S
4
3
9
 D
Y
S
4
4
1
 D
Y
S
4
4
2
 D
Y
S
4
4
4
 D
Y
S
4
4
5
 D
Y
S
4
4
6
 D
Y
S
4
4
7
 D
Y
S
4
4
8
 D
Y
S
4
4
9
 D
Y
S
4
5
2
 D
Y
S
4
5
4
 D
Y
S
4
5
5
 D
Y
S
4
5
6
 D
Y
S
4
5
8
 D
Y
S
4
5
9
a
 D
Y
S
4
5
9
b
 D
Y
S
4
6
0
 D
Y
S
4
6
1
 D
Y
S
4
6
2
 D
Y
S
4
6
3
 D
Y
S
4
6
4
a
 D
Y
S
4
6
4
b
 D
Y
S
4
6
4
c
 D
Y
S
4
6
4
d
 D
Y
S
5
7
0
 D
Y
S
5
7
6
 D
Y
S
6
0
7
 C
D
Y
a
 C
D
Y
b
 G
A
T
A

A
1
0
 G
A
T
A

C
4
/
D
Y
S
6
3
5
 T
A
G
A

H
4
 G
G
A
A
T
1
B
0
7
 Y
C
A
I
I
a
 Y
C
A
I
I
b
ANCESTRAL 15131414143022101113 11161012 11   232027 111114148911   121414162016143637  11 1921
40777 WmVA 141314141430221011131211161011 1112 13232027 11814148911   121415162016143636  11 1921
68140 WmVA 14131414143022101113 11161011 11   232027 11814148911   121415162016143636  11 1921
58559 WmVA 14131414143022101113 11161011 11   232027 11814148911   121415162016143637  11 1921
70450 WmVA 14131414143022101113 11161012 11   232027 11814148911   121415162016143637  11 1921
21554 Arth 14131414143022101113 11  11                                  
42370 WmNC 151314141329221011131211161011 1112 13232027 11814148911   121415162016143536  11 1921
46246 Geor 14131414132922101113 11161011 11   232027 111114148911   121414162016143536  11 1921
55330 WmNC 15131414132922101113 11  11                                  
27814 Valn 14131514143022101113 11161011 12   232030 11816158910   121414162017153437  11 1721
Distance from reference: Zero One Two Three+

Yhrd - DNA Comparison
ID D
Y
S
1
9
 D
Y
S
3
8
9

I
 D
Y
S
3
8
9

I
I
 D
Y
S
3
9
0
 D
Y
S
3
9
1
 D
Y
S
3
9
2
 D
Y
S
3
9
3
 D
Y
S
3
8
5
 D
Y
S
4
3
8
 D
Y
S
4
3
9
ANCESTRAL 1514302210111313.141012
40777 WmVA 1414302210111313.141011
68140 WmVA 1414302210111313.141011
58559 WmVA 1414302210111313.141011
70450 WmVA 1414302210111313.141012
21554 Arth 1414302210111313.14
11
42370 WmNC 1513292210111313.141011
46246 Geor 1413292210111313.141011
55330 WmNC 1513292210111313.14
11
27814 Valn 1414302210111313.151011
Distance from reference: Zero One Two Three+

Genetic Distance
IDA
N
C
E
S
T
R
A
L
4
0
7
7
7

W
m
V
A
6
8
1
4
0

W
m
V
A
5
8
5
5
9

W
m
V
A
7
0
4
5
0

W
m
V
A
2
1
5
5
4

A
r
t
h
4
2
3
7
0

W
m
N
C
4
6
2
4
6

G
e
o
r
5
5
3
3
0

W
m
N
C
2
7
8
1
4

V
a
l
n
ANCESTRAL 375543265213
40777 WmVA 567012034212
68140 WmVA 503712034212
58559 WmVA 411371045211
70450 WmVA 322137156312
21554 Arth 20001122121
42370 WmNC 633452673014
46246 Geor 544561337113
55330 WmNC 22223201123
27814 Valn 131212111211413337
Related Probably Related Possibly Related
FTDNA's Interpreting Genetic Distance for 12 Markers
FTDNA's Interpreting Genetic Distance for 25 Markers
FTDNA's Interpreting Genetic Distance for 37 Markers
- Infinite allele mutation model is used
- Values on the diagonal indicate number of markers tested

Time to Most Recent Common Ancestor (Years)
IDA
N
C
E
S
T
R
A
L
4
0
7
7
7

W
m
V
A
6
8
1
4
0

W
m
V
A
5
8
5
5
9

W
m
V
A
7
0
4
5
0

W
m
V
A
2
1
5
5
4

A
r
t
h
4
2
3
7
0

W
m
N
C
4
6
2
4
6

G
e
o
r
5
5
3
3
0

W
m
N
C
2
7
8
1
4

V
a
l
n
ANCESTRAL 37700700600500180080070018001600
40777 WmVA 7006720032540077537560018001475
68140 WmVA 7002003732540077550060018001475
58559 WmVA 6003253253732577560070018001350
70450 WmVA 50040040032537130070080023501475
21554 Arth 18007757757751300121800130018001300
42370 WmNC 8003755006007001800675007751725
46246 Geor 70060060070080013005003713001600
55330 WmNC 1800180018001800235018007751300122350
27814 Valn 16001475147513501475130017251600235037
0-225 Years 250-475 Years 500-725 Years 750-975 Years
- Infinite allele mutation model is used
- Average mutation rate varies: 0.0040 to 0.0054, from FTDNA derived rates
- Values on the diagonal indicate number of markers tested
- Probability is 95% that the TMRCA is no longer than indicated
- Average generaton: 25 years

PHYLIP compatible TMRCA table

Mutation Rates - FTDNA values
DYS393DYS390DYS19/394DYS19bDYS391DYS385aDYS385bDYS426DYS388DYS439DYS389-1DYS392DYS389-2 
0.00400.00400.00400.00400.00400.00400.00400.00400.00400.00400.00400.00400.0040 
 
DYS458DYS459aDYS459bDYS455DYS454DYS447DYS437DYS448DYS449DYS464aDYS464bDYS464cDYS464dDYS464eDYS464fDYS464g
0.00480.00480.00480.00480.00480.00480.00480.00480.00480.00480.00480.00480.00480.00480.00480.0048
 
DYS460GATAH4YCAIIaYCAIIbDYS456DYS607DYS576DYS570CDYaCDYbDYS442DYS438 
0.00750.00750.00750.00750.00750.00750.00750.00750.00750.00750.00750.0075 
 
DYS531DYS578DYS395S1aDYS395S1bDYS590DYS537DYS641DYS472DYS406S1DYS511DYS425DYS413aDYS413bDYS557DYS594 
0.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.0024 
 
DYS436DYS490DYS534DYS450DYS444DYS481DYS520DYS446DYS617DYS568DYS487DYS572DYS640DYS492DYS565 
0.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.0024 
 
DYS461DYS462GATAA10DYS635GAAT1B07DYS441DYS445DYS452DYS463DYS434DYS435DYS485DYS494DYS495DYS505 
0.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.0024 
 
DYS522DYS533DYS549DYS556DYS575DYS589DYS636DYS638DYS643DYS714DYS716DYS717DYS726DXYS156-Y 
0.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.00240.0024 
 
Mutation rates not yet identified have a light green background and use the value of 0.0024 from the constant rate box


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