Shahid H. Bokhari













Home





new webpage  
Welcome to the web page of Shahid H. Bokhari. Here is a resumé and a list of papers on the MTA/XMT.

pdf version of resumé (51k)

     
    1 Shahid H. Bokhari, Bracy H. Elton and Dimitri J. Mavriplis, The Cray MTA and Unstructured Meshes,  September 26, 2000.  A revised version of  NASA CR-1998-208953, ICASE Interim Report No. 33, December 1998.    pdf
    (330k)
    2 Harry F. Jordan, Shahid H. Bokhari, Shawn Staker, Jon R. Sauer, Mona A. ElHelbawy and Melinda J. Piket-May, Experience with ADI-FDTD Techniques on the Cray MTA Supercomputer, Proc. SPIE Conf., vol. 4528, August 21-22, 2001, Denver, Colorado.  pdf
    (72k)
    3 Shahid H. Bokhari, Matthew A. Glaser, Harry F. Jordan, Yves Lansac, Jon R. Sauer and Bart Van Zeghbroeck. Parallelizing a DNA Simulation Code for the Cray MTA-2, Proc. IEEE Computer Society Bioinformatics Conference (CSB2002), pp. 291-302, Stanford, August 15, 2002.  IEEE 
    Computer 
    Society
    4 Shahid H. Bokhari and Jon R. Sauer, Sequence Alignment on the Cray MTA-2, Concurrency and Computation: Practice and Experience, vol. 16, no. 9, pp. 823-839, 2004.  C&C:P&E
    5 Shahid H. Bokhari and Jon R. Sauer, A Parallel Graph Decomposition Algorithm for DNA Sequencing with Nanopores, Bioinformatics, vol. 21, no. 7, 2005, pp. 889-896.  Bioinformatics
    6 Shahid H. Bokhari and Jon R. Sauer, Parallel Algorithms for Bioinformatics, invited chapter in Bioinformatics and Computational Biology, A. Zomaya, Editor. April 2006, Wiley.   Wiley
    7 Shahid Bokhari and Joel Saltz, Exploring the Performance of Massively Multithreaded Architectures. Concurrency and Computation: Practice and Experience, vol. 22, no. 5, pp. 588-616, 2009.  C&C:P&E
    8 Shahid Bokhari and Joel Saltz, Exploring the Performance of Massively Multithreaded Architectures, Technical Report OSUBMI-TR-2009-n01, Department of Biomedical Informatics, Ohio State University, January 20, 2009. Tech. Report version of above, contains some additional results.   pdf
    (1.1M)
    9 Shahid Bokhari, Laura Pomeroy and Daniel Janies, Reassortment Networks and the Evolution of Pandemic H1N1 Swine-origin Influenza, IEEE/ACM Transactions on Computational Biology & Bioinformatics, vol. 9, no. 1, pp. 214-227, 2012.  IEEE TCBB
    10 Shahid Bokhari and Saniyah Bokhari, A Comparison of the Cray XMT and XMT-2, Concurrency and Computation: Practice and Experience, published online Aug 9, 2012. DOI: 10.1002/cpe.2909.   C&C:P&E
    11 Shahid H. Bokhari, Umit V. Catalyurek and Metin N. Gurcan, Massively Multithreaded Maxflow for Image Segmentation on the Cray XMT-2, Technical Report No. 1, Algopath LLC, Cuperino, CA, March 28, 2013.  pdf
    (32MB)
    12 Shahid H. Bokhari, Umit V. Catalyurek and Metin N. Gurcan, Massively Multithreaded Maxflow for Image Segmentation on the Cray XMT-2, Concurrency and Computation: Practice and Experience, published online Dec 9, 2013. DOI: 10.1002/cpe.2909. Revised version of above, contains some additional results.   C&C:P&E
















Last updated on Wednesday, July 16, 2014