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Bedard, C., Kroger, H., and Destexhe, A. (2004) Modeling extracellular field potentials and the frequency-filtering properties of extracellular space. Biophysical Journal, 86, 1829-1842.

Beeman, D., Bower, J.M., De Schutter, E., Efthimiadis, E.N., Goddard, N., & Leigh, J. (1997) The GENESIS simulator-based neuronal database. In: Koslow, S.H. and Huerta, M.F. (Eds.) Neuroinformatics: An Overview of the Human Brain Project. Mahwah NJ: Lawrence Erlbaum Associates, pp. 57-81.

[PDF] Blackwell K.T. and Hellgren Kotaleski J. (2003) Modeling the dynamics of second messenger pathways. In: Kotter, R. (Ed.) Neuroscience Databases: A Practical Guide. Norwell, MA: Kluwer Academic Publishers.

[PDF] Cannon, R., Gewaltig, M., Gleeson, P., Bhalla, U., Cornelis, H., Hines, M., Howell, F., Muller, E., Stiles, J., Wils, S., and De Schutter, E. (2007) Interoperability of Neuroscience Modeling Software: Current Status and Future Directions Neuroinformatics, 5

Carnevale, N.T., Tsai, K.Y., Claiborne, B.J., and Brown, T.H. (1995) The electrotonic transformation: a tool for relating neuronal form to function. In: Tesauro, G., Touretzky, D.S., and Leen, T.K. (Eds.) Advances in Neural Information Processing Systems, Vol. 7, Cambridge, MA: MIT Press, pp. 69-76.

[PDF] Cornelis, Hugo and De Schutter, Eric (2003) NeuroSpaces: separating modeling and simulation. Neurocomputing, 52-54, 227-231.

Crook, S., Beeman, D., Gleeson, P., and Howell, F. (2005) XML for Model Specification in Neuroscience: An Introduction and Workshop Summary. Brains, Minds & Media. 1, bmm228 (urn:nbn:de:0009-3-2282).

De Schutter, Eric (1992) A consumer guide to neuronal modeling software. Trends in Neuroscience, 15, 462-464.

Destexhe, A., Mainen, Z.F., and Sejnowski, T.J. (1994) Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. Journal of Computational Neuroscience, 1, 195-230.

[PDF] Diesmann, Markus and Gewaltig, Marc-Oliver (2002) NEST: An Environment for Neural Systems Simulations. Ges. für Wiss. Datenverarbeitung , Forschung und wisschenschaftliches Rechnen, 58, 43-70.

Eichler-West, Rogene M., De Schutter, E., & Wilcox, G.L. (1999) Using evolutionary algorithms to search for control parameters in a nonlinear partial differential equation. In Evolutionary Algorithms, Vol. 111 of the IMA Volumes in Mathematics and its Applications, Springer-Verlag, 33-64 (1999).

Galan, R.F., Ermentrout, G.B., and Urban, N.N. (2005) Efficient Estimation of Phase-Resetting Curves in Real Neurons and its Significance for Neural-Network Modeling. Physical Review Letters, 94, 158101.

Gleeson, P., Steuber, V., and Silver, R.A. (2007) neuroConstruct: A Tool for Modeling Networks of Neurons in 3D Space Neuron, 54, 219-235.

[PDF] Goddard, N., Hucka, M., Howell, F., Cornelis, H., and Beeman, D. (2001) Towards NeuroML: Model Description Methods for Collaborative Modeling in Neuroscience. Phil. Trans. Royal Society B, 356 (1412), 1209-1228.

Graham, B.P., and van Ooyen, A. (2006) Mathematical modelling and numerical simulation of the morphological development of neurons. BMC Neuroscience, 7 (Suppl 1):S9.

Hines, M.L., and Carnevale, N.T. (1997) The NEURON Simulation Environment. Neural Computation, 9 (6), 1179-1209.

[PDF] Hines, M.L., and Carnevale, N.T. (2000) Expanding NEURON's Repertoire of Mechanisms with NMODL. Neural Computation, 12, 839-851.

Izhikevich, E.M. (2004) Which Model to Use for Cortical Spiking Neurons? IEEE Transactions on Neural Networks, 15, 1063-1070.

[PDF] Kotter, R. (2004) Neuroscience databases: tools for exploring brain structure-function relationships. Philos Trans R Soc Lond B Biol Sci, 356(1412), 1111-1120.

Liu, Z., Golowasch, J., Marder, E., and Abbott, L.F. (1998) A Model Neuron with Activity-Dependent Conductances Regulated by Multiple Calcium Sensors. The Journal of Neuroscience, 18(7), 2309-2320.

[PDF] Natschläger, T., Markram, H., and Maass, W. (2002). Computer models and analysis tools for neural microcircuits. In Kötter, R. (Ed.) Neuroscience Databases: A Practical Guide. Norwell, MA: Kluwer Academic Publishers, pp. 121-136.

[PDF] Prinz, A.A., Abbott, L.F., and Marder, E. (2004) The Dynamic Clamp Comes of Age. Trends in Neuroscience, 27:218-224.

Prinz, A.A., Billimoria, C.P., and Marder, E. (2003) Alternative to Hand-Tuning Conductance-Based Models: Construction and Analysis of Databases of Model Neurons. Journal of Neurophysiology, 90, 3998-4015.

[PS] Stainhauser, D., Wyler, L., Müller, L., Senn, W., Kleinle, J., Larkum, M., Lüscher, H.-R., Streit, J., Vogt, K., and Wannier, T. (1995) An Evaluation Aid for Neural Modeling Software. Technical Report IAM-95-013 Institut für Informatik und angewandte Mathematik, Universitaüt Bern.

Strout, J. (1997) A Library for the Compartmental Simulation of Neurons. Neuroscience-Net, Volume 2, Article #10013.

Vetter, P., Roth, A., and Hausser, M. (2001) Propagation of Action Potentials in Dendrites Depends on Dendritic Morphology. Journal of Neurophysiology, 85, 926-937.

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